Actinopolymorpha pittospori | Type strain | DSM 45354, ACM 5288, JCM 18294, NRRL B-24810, PIP 143 (2024)

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16346]

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16346]	Actinopolymorpha pittospori strain PIP 143 16S ribosomal RNA gene, partial sequence	FJ805429	1407	GenBank ENA	648752 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Actinopolymorpha pittospori DSM 45354	GCA_014873875	contig	GenBank ENA	648752 tax ID	*
[Ref.: #66792]	Actinopolymorpha pittospori strain DSM 45354	648752.3	wgs	PATRIC	648752 tax ID	*
[Ref.: #66792]	Actinopolymorpha pittospori DSM 45354	2880531579	draft	JGI IMG/M	648752 tax ID	*

[Ref.: #16346]

GC-content

69.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinopolymorpha pittospori strain DSM 45354 PATRIC: 648752.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	90	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinopolymorpha pittospori strain DSM 45354 PATRIC: 648752.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.779	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	91.876	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.138	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	78.542	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88	no

Availability in culture collections External links

[Ref.: #16346]

Culture collection no.

DSM 45354, ACM 5288, JCM 18294, NRRL B-24810, PIP 143

[Ref.: #80411]

SI-ID 403178

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tenggerimyces mesophilus gen. nov., sp. nov., a member of the family Nocardioidaceae.	Sun HM, Zhang T, Wei YZ, Liu HY, Yu LY, Zhang YQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000421	2015	*
Phylogeny	Actinopolymorpha pittospori sp. nov., an endophyte isolated from surface-sterilized leaves of an apricot tree (Pittosporum phylliraeoides).	Kaewkla O, Franco CMM	Int J Syst Evol Microbiol	10.1099/ijs.0.029579-0	2010	*

References
#16346 Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH; Curators of the DSMZ; DSM 45354

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM (DOI 10.1099/ijsem.0.004332)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information).

#67770 Japan Collection of Microorganism (JCM); Curators of the JCM;
#68379 Automatically annotated from API Coryne.
#68382 Automatically annotated from API zym.
#69385 Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig.

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta.

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information).

#69481 Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1. (DOI 10.21203/rs.3.rs-2527258/v1)

#80411

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers. (DOI 10.60712/SI-ID403178.1)

* These data were automatically processed and therefore are not curated

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[Ref.: #16346]	Sample type/isolated from	surface-sterilized leave of the Australian native apricot tree Pittosporum phylliraeoides
[Ref.: #16346]	Host species	Pittosporum phylliraeoides
[Ref.: #16346]	Geographic location (country and/or sea, region)	Adelaide, Flinders University campus
[Ref.: #16346]	Country	Australia
[Ref.: #16346]	Country ISO 3 Code	AUS
[Ref.: #16346]	Continent	Australia and Oceania

[Ref.: #67770]	Sample type/isolated from	Leaves of Pittosporum phylliraeoides growing on the campus of Flinders Univ.
[Ref.: #67770]	Host species	Pittosporum phylliraeoides
[Ref.: #67770]	Geographic location (country and/or sea, region)	Adelaide, South Australia
[Ref.: #67770]	Country	Australia
[Ref.: #67770]	Country ISO 3 Code	AUS
[Ref.: #67770]	Continent	Australia and Oceania
* marker position based on {}

Aquatic Samples	37
Soil Samples	786
Animal Samples	47
Plant Samples	63
Total Samples	933

Actinopolymorpha pittospori | Type strain | DSM 45354, ACM 5288, JCM 18294, NRRL B-24810, PIP 143 (2024)

Actinopolymorpha pittospori strain DSM 45354

Actinopolymorpha pittospori strain DSM 45354

Change proposal

Change proposal